J5_7ABZ_006
3D structure
- PDB id
- 7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.21 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7ABZ|1|1|U|2076, 7ABZ|1|1|G|2428, 7ABZ|1|1|G|2429, 7ABZ|1|1|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ABZ_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.2345
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ABZ|1|1|U|2074
7ABZ|1|1|U|2075
7ABZ|1|1|U|2076
7ABZ|1|1|A|2077
*
7ABZ|1|1|U|2243
7ABZ|1|1|U|2244
7ABZ|1|1|U|2245
7ABZ|1|1|G|2246
*
7ABZ|1|1|C|2258
7ABZ|1|1|U|2259
*
7ABZ|1|1|A|2281
7ABZ|1|1|G|2282
*
7ABZ|1|1|C|2427
7ABZ|1|1|G|2428
7ABZ|1|1|G|2429
7ABZ|1|1|A|2430
7ABZ|1|1|U|2431
7ABZ|1|1|A|2432
7ABZ|1|1|A|2433
7ABZ|1|1|A|2434
7ABZ|1|1|A|2435
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L27
- Chain B
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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