J5_7AQD_005

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7AQD|1|A|G|1787, 7AQD|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AQD_005 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1116

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7AQD|1|A|G|1719
7AQD|1|A|C|1720
7AQD|1|A|A|1721
7AQD|1|A|A|1722
7AQD|1|A|A|1723
7AQD|1|A|A|1724
7AQD|1|A|U|1725
7AQD|1|A|G|1726
7AQD|1|A|A|1727
*
7AQD|1|A|U|1751
7AQD|1|A|G|1752
*
7AQD|1|A|C|1780
7AQD|1|A|C|1781
*
7AQD|1|A|G|1785
7AQD|1|A|U|1786
7AQD|1|A|G|1787
7AQD|1|A|A|1788
7AQD|1|A|A|1789
7AQD|1|A|U|1790
7AQD|1|A|A|1791
7AQD|1|A|G|1792
7AQD|1|A|G|1793
*
7AQD|1|A|C|2017
7AQD|1|A|A|2018
7AQD|1|A|C|2019

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain a

50S ribosomal protein L19