J5_7ASO_001
3D structure
- PDB id
- 7ASO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CAAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 7ASO|1|Y|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ASO_001 not in the Motif Atlas
- Homologous match to J5_4WF9_001
- Geometric discrepancy: 0.1373
- The information below is about J5_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7ASO|1|Y|C|47
7ASO|1|Y|A|48
7ASO|1|Y|A|49
7ASO|1|Y|U|50
7ASO|1|Y|G|51
7ASO|1|Y|A|52
7ASO|1|Y|A|53
7ASO|1|Y|G|54
*
7ASO|1|Y|C|115
7ASO|1|Y|G|116
7ASO|1|Y|A|117
7ASO|1|Y|A|118
7ASO|1|Y|U|119
7ASO|1|Y|G|120
*
7ASO|1|Y|C|129
7ASO|1|Y|A|130
*
7ASO|1|Y|U|149
7ASO|1|Y|A|150
7ASO|1|Y|U|151
*
7ASO|1|Y|A|178
7ASO|1|Y|A|179
7ASO|1|Y|G|180
Current chains
- Chain Y
- 23S
Nearby chains
- Chain i
- 50S ribosomal protein L34
Coloring options: