J5_7JQB_001
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7JQB|1|A|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7JQB_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0759
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7JQB|1|A|C|30
7JQB|1|A|U|31
7JQB|1|A|U|32
7JQB|1|A|G|33
7JQB|1|A|U|34
*
7JQB|1|A|A|521
7JQB|1|A|A|522
7JQB|1|A|A|523
7JQB|1|A|U|524
7JQB|1|A|A|525
7JQB|1|A|A|526
7JQB|1|A|C|527
*
7JQB|1|A|G|558
7JQB|1|A|G|559
7JQB|1|A|A|560
7JQB|1|A|A|561
7JQB|1|A|U|562
7JQB|1|A|G|563
*
7JQB|1|A|C|592
7JQB|1|A|C|593
7JQB|1|A|A|594
7JQB|1|A|U|595
*
7JQB|1|A|A|641
7JQB|1|A|U|642
7JQB|1|A|A|643
7JQB|1|A|G|644
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain c
- Uncharacterized protein
- Chain f
- eS30
Coloring options: