J5_7LS2_006
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 7LS2|1|m2|A|527, 7LS2|1|m2|C|595
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7LS2_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1553
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7LS2|1|m2|C|30
7LS2|1|m2|U|31
7LS2|1|m2|U|32
7LS2|1|m2|G|33
7LS2|1|m2|U|34
*
7LS2|1|m2|A|523
7LS2|1|m2|A|524
7LS2|1|m2|A|525
7LS2|1|m2|U|526
7LS2|1|m2|A|527
7LS2|1|m2|A|528
7LS2|1|m2|C|529
*
7LS2|1|m2|G|560
7LS2|1|m2|G|561
7LS2|1|m2|A|562
7LS2|1|m2|A|563
7LS2|1|m2|U|564
7LS2|1|m2|G|565
*
7LS2|1|m2|C|594
7LS2|1|m2|C|595
7LS2|1|m2|A|596
7LS2|1|m2|U|597
*
7LS2|1|m2|A|643
7LS2|1|m2|U|644
7LS2|1|m2|A|645
7LS2|1|m2|OMG|646
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain E3
- 40S ribosomal protein S23
- Chain L3
- 40S ribosomal protein S9
- Chain T3
- 40S ribosomal protein S30
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