J5_7M4Z_003
3D structure
- PDB id
- 7M4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 70S with hpf
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7M4Z|1|A|U|1250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7M4Z_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0881
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7M4Z|1|A|C|582
7M4Z|1|A|G|583
7M4Z|1|A|A|584
7M4Z|1|A|C|585
7M4Z|1|A|U|586
7M4Z|1|A|U|587
*
7M4Z|1|A|A|666
7M4Z|1|A|G|667
7M4Z|1|A|A|668
7M4Z|1|A|C|669
*
7M4Z|1|A|G|807
7M4Z|1|A|U|808
7M4Z|1|A|U|809
7M4Z|1|A|C|810
*
7M4Z|1|A|G|1190
7M4Z|1|A|C|1191
*
7M4Z|1|A|G|1245
7M4Z|1|A|C|1246
7M4Z|1|A|G|1247
7M4Z|1|A|A|1248
7M4Z|1|A|A|1249
7M4Z|1|A|U|1250
7M4Z|1|A|G|1251
Current chains
- Chain A
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
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