J5_7MQ8_001
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7MQ8|1|L1|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MQ8_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1658
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7MQ8|1|L1|C|30
7MQ8|1|L1|U|31
7MQ8|1|L1|U|32
7MQ8|1|L1|G|33
7MQ8|1|L1|U|34
*
7MQ8|1|L1|A|521
7MQ8|1|L1|A|522
7MQ8|1|L1|A|523
7MQ8|1|L1|U|524
7MQ8|1|L1|A|525
7MQ8|1|L1|A|526
7MQ8|1|L1|C|527
*
7MQ8|1|L1|G|558
7MQ8|1|L1|G|559
7MQ8|1|L1|A|560
7MQ8|1|L1|A|561
7MQ8|1|L1|U|562
7MQ8|1|L1|G|563
*
7MQ8|1|L1|C|592
7MQ8|1|L1|C|593
7MQ8|1|L1|A|594
7MQ8|1|L1|U|595
*
7MQ8|1|L1|A|641
7MQ8|1|L1|U|642
7MQ8|1|L1|A|643
7MQ8|1|L1|G|644
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L9
- 40S ribosomal protein S9
- Chain NB
- Something about silencing protein 10
- Chain NC
- Neuroguidin
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SR
- 40S ribosomal protein S23
- Chain SY
- Probable U3 small nucleolar RNA-associated protein 11
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