J5_7MSM_012

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7MSM|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MSM_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0938

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7MSM|1|A|C|47
7MSM|1|A|G|48
7MSM|1|A|A|49
7MSM|1|A|U|50
7MSM|1|A|G|51
7MSM|1|A|A|52
7MSM|1|A|A|53
7MSM|1|A|G|54
*
7MSM|1|A|C|116
7MSM|1|A|G|117
7MSM|1|A|A|118
7MSM|1|A|A|119
7MSM|1|A|U|120
7MSM|1|A|G|121
*
7MSM|1|A|C|130
7MSM|1|A|A|131
*
7MSM|1|A|U|150
7MSM|1|A|A|151
7MSM|1|A|C|152
*
7MSM|1|A|G|178
7MSM|1|A|A|179
7MSM|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23