J5_7OOD_007

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAU*AAG

Length

22 nucleotides

Bulged bases

7OOD|1|3|U|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OOD_007 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1433

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|C|49
7OOD|1|3|G|50
7OOD|1|3|A|51
7OOD|1|3|U|52
7OOD|1|3|G|53
7OOD|1|3|A|54
7OOD|1|3|A|55
7OOD|1|3|G|56
*
7OOD|1|3|C|117
7OOD|1|3|G|118
7OOD|1|3|A|119
7OOD|1|3|A|120
7OOD|1|3|U|121
7OOD|1|3|G|122
*
7OOD|1|3|C|131
7OOD|1|3|G|132
*
7OOD|1|3|C|151
7OOD|1|3|A|152
7OOD|1|3|U|153
*
7OOD|1|3|A|179
7OOD|1|3|A|180
7OOD|1|3|G|181

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain s

50S ribosomal protein L23