J5_7PHC_003
3D structure
- PDB id
- 7PHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7PHC|1|3|U|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PHC_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1983
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7PHC|1|3|C|617
7PHC|1|3|G|618
7PHC|1|3|A|619
7PHC|1|3|G|620
7PHC|1|3|U|621
7PHC|1|3|U|622
*
7PHC|1|3|A|703
7PHC|1|3|G|704
7PHC|1|3|A|705
7PHC|1|3|C|706
*
7PHC|1|3|G|844
7PHC|1|3|U|845
7PHC|1|3|U|846
7PHC|1|3|C|847
*
7PHC|1|3|G|1226
7PHC|1|3|C|1227
*
7PHC|1|3|G|1280
7PHC|1|3|A|1281
7PHC|1|3|G|1282
7PHC|1|3|A|1283
7PHC|1|3|A|1284
7PHC|1|3|U|1285
7PHC|1|3|G|1286
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
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