J5_7PIA_012
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7PIA|1|3|U|2083, 7PIA|1|3|G|2436, 7PIA|1|3|G|2437, 7PIA|1|3|A|2438, 7PIA|1|3|A|2440, 7PIA|1|3|A|2442
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PIA_012 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.4832
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PIA|1|3|U|2081
7PIA|1|3|U|2082
7PIA|1|3|U|2083
7PIA|1|3|A|2084
*
7PIA|1|3|U|2251
7PIA|1|3|U|2252
7PIA|1|3|U|2253
7PIA|1|3|G|2254
*
7PIA|1|3|C|2266
7PIA|1|3|G|2267
*
7PIA|1|3|C|2289
7PIA|1|3|G|2290
*
7PIA|1|3|C|2435
7PIA|1|3|G|2436
7PIA|1|3|G|2437
7PIA|1|3|A|2438
7PIA|1|3|U|2439
7PIA|1|3|A|2440
7PIA|1|3|A|2441
7PIA|1|3|A|2442
7PIA|1|3|A|2443
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain 8
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain u
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L28
- Chain z
- 50S ribosomal protein L33 1
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