J5_7PIB_003
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCAAAUUAA*UG*CC*GUGAAGAAC*GAC
- Length
- 25 nucleotides
- Bulged bases
- 7PIB|1|3|G|1765, 7PIB|1|3|A|1770
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PIB_003 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1867
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7PIB|1|3|G|1708
7PIB|1|3|C|1709
7PIB|1|3|A|1710
7PIB|1|3|A|1711
7PIB|1|3|A|1712
7PIB|1|3|U|1713
7PIB|1|3|U|1714
7PIB|1|3|A|1715
7PIB|1|3|A|1716
*
7PIB|1|3|U|1740
7PIB|1|3|G|1741
*
7PIB|1|3|C|1758
7PIB|1|3|C|1759
*
7PIB|1|3|G|1763
7PIB|1|3|U|1764
7PIB|1|3|G|1765
7PIB|1|3|A|1766
7PIB|1|3|A|1767
7PIB|1|3|G|1768
7PIB|1|3|A|1769
7PIB|1|3|A|1770
7PIB|1|3|C|1771
*
7PIB|1|3|G|1995
7PIB|1|3|A|1996
7PIB|1|3|C|1997
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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