J5_7PIB_009

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

7PIB|1|3|U|2083, 7PIB|1|3|G|2436, 7PIB|1|3|G|2437, 7PIB|1|3|A|2438, 7PIB|1|3|U|2439, 7PIB|1|3|A|2440, 7PIB|1|3|A|2441, 7PIB|1|3|A|2442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PIB_009 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.189

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7PIB|1|3|U|2081
7PIB|1|3|U|2082
7PIB|1|3|U|2083
7PIB|1|3|A|2084
*
7PIB|1|3|U|2251
7PIB|1|3|U|2252
7PIB|1|3|U|2253
7PIB|1|3|G|2254
*
7PIB|1|3|C|2266
7PIB|1|3|G|2267
*
7PIB|1|3|C|2289
7PIB|1|3|G|2290
*
7PIB|1|3|C|2435
7PIB|1|3|G|2436
7PIB|1|3|G|2437
7PIB|1|3|A|2438
7PIB|1|3|U|2439
7PIB|1|3|A|2440
7PIB|1|3|A|2441
7PIB|1|3|A|2442
7PIB|1|3|A|2443

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain 8

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2

Chain k

50S ribosomal protein L15

Chain u

50S ribosomal protein L27

Chain v

50S ribosomal protein L28

Chain z

50S ribosomal protein L33 1