J5_7PJZ_001

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7PJZ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PJZ_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1418

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7PJZ|1|A|C|47
7PJZ|1|A|G|48
7PJZ|1|A|A|49
7PJZ|1|A|U|50
7PJZ|1|A|G|51
7PJZ|1|A|A|52
7PJZ|1|A|A|53
7PJZ|1|A|G|54
*
7PJZ|1|A|C|116
7PJZ|1|A|G|117
7PJZ|1|A|A|118
7PJZ|1|A|A|119
7PJZ|1|A|U|120
7PJZ|1|A|G|121
*
7PJZ|1|A|C|130
7PJZ|1|A|A|131
*
7PJZ|1|A|U|148
7PJZ|1|A|A|149
7PJZ|1|A|U|150
*
7PJZ|1|A|A|176
7PJZ|1|A|G|177
7PJZ|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34