J5_7QIZ_007
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 7QIZ|1|S2|C|547
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_007 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0906
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7QIZ|1|S2|C|31
7QIZ|1|S2|U|32
7QIZ|1|S2|U|33
7QIZ|1|S2|G|34
7QIZ|1|S2|U|35
*
7QIZ|1|S2|A|477
7QIZ|1|S2|A|478
7QIZ|1|S2|A|479
7QIZ|1|S2|U|480
7QIZ|1|S2|A|481
7QIZ|1|S2|A|482
7QIZ|1|S2|C|483
*
7QIZ|1|S2|G|512
7QIZ|1|S2|G|513
7QIZ|1|S2|A|514
7QIZ|1|S2|A|515
7QIZ|1|S2|U|516
7QIZ|1|S2|G|517
*
7QIZ|1|S2|C|546
7QIZ|1|S2|C|547
7QIZ|1|S2|A|548
7QIZ|1|S2|U|549
*
7QIZ|1|S2|A|595
7QIZ|1|S2|U|596
7QIZ|1|S2|A|597
7QIZ|1|S2|OMG|598
Current chains
- Chain S2
- 18S
Nearby chains
- Chain CA
- 40S body ribosomal protein uS12
- Chain GA
- 40S body ribosomal protein uS4
- Chain MA
- 40S ribosomal protein S30
Coloring options: