J5_7S0S_001

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7S0S|1|C|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S0S_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0709

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7S0S|1|C|C|44
7S0S|1|C|G|45
7S0S|1|C|A|46
7S0S|1|C|U|47
7S0S|1|C|G|48
7S0S|1|C|A|49
7S0S|1|C|A|50
7S0S|1|C|G|51
*
7S0S|1|C|C|113
7S0S|1|C|G|114
7S0S|1|C|A|115
7S0S|1|C|A|116
7S0S|1|C|U|117
7S0S|1|C|G|118
*
7S0S|1|C|C|127
7S0S|1|C|G|128
*
7S0S|1|C|C|147
7S0S|1|C|A|148
7S0S|1|C|C|149
*
7S0S|1|C|G|175
7S0S|1|C|G|176
7S0S|1|C|G|177

Current chains

Chain C

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L23

Chain e

50S ribosomal protein L34