J5_7TOQ_001
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7TOQ|1|A18S|C|593
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOQ_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1556
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7TOQ|1|A18S|C|30
7TOQ|1|A18S|U|31
7TOQ|1|A18S|U|32
7TOQ|1|A18S|G|33
7TOQ|1|A18S|U|34
*
7TOQ|1|A18S|A|521
7TOQ|1|A18S|A|522
7TOQ|1|A18S|A|523
7TOQ|1|A18S|U|524
7TOQ|1|A18S|A|525
7TOQ|1|A18S|A|526
7TOQ|1|A18S|C|527
*
7TOQ|1|A18S|G|558
7TOQ|1|A18S|G|559
7TOQ|1|A18S|A|560
7TOQ|1|A18S|A|561
7TOQ|1|A18S|U|562
7TOQ|1|A18S|G|563
*
7TOQ|1|A18S|C|592
7TOQ|1|A18S|C|593
7TOQ|1|A18S|A|594
7TOQ|1|A18S|U|595
*
7TOQ|1|A18S|A|641
7TOQ|1|A18S|U|642
7TOQ|1|A18S|A|643
7TOQ|1|A18S|G|644
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS09
- 40S ribosomal protein S9
- Chain AS23
- 40S ribosomal protein S23
- Chain AS30
- 40S ribosomal protein S30
Coloring options: