J5_7UNV_006
3D structure
- PDB id
- 7UNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7UNV|1|A|U|2063, 7UNV|1|A|G|2415, 7UNV|1|A|G|2416, 7UNV|1|A|A|2417, 7UNV|1|A|U|2418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UNV_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0786
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UNV|1|A|U|2061
7UNV|1|A|U|2062
7UNV|1|A|U|2063
7UNV|1|A|A|2064
*
7UNV|1|A|U|2230
7UNV|1|A|U|2231
7UNV|1|A|U|2232
7UNV|1|A|G|2233
*
7UNV|1|A|C|2245
7UNV|1|A|U|2246
*
7UNV|1|A|A|2268
7UNV|1|A|G|2269
*
7UNV|1|A|C|2414
7UNV|1|A|G|2415
7UNV|1|A|G|2416
7UNV|1|A|A|2417
7UNV|1|A|U|2418
7UNV|1|A|A|2419
7UNV|1|A|A|2420
7UNV|1|A|A|2421
7UNV|1|A|A|2422
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain N
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L28
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