J5_7UPH_005
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 7UPH|1|I|A|2032, 7UPH|1|I|U|2062
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UPH_005 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.2573
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7UPH|1|I|C|2031
7UPH|1|I|A|2032
7UPH|1|I|G|2033
*
7UPH|1|I|C|2060
7UPH|1|I|G|2061
7UPH|1|I|U|2062
7UPH|1|I|A|2063
7UPH|1|I|C|2064
*
7UPH|1|I|G|2077
7UPH|1|I|G|2078
7UPH|1|I|G|2079
*
7UPH|1|I|C|2755
7UPH|1|I|A|2756
*
7UPH|1|I|U|3511
7UPH|1|I|G|3512
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L32
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
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