J5_7WTM_001

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7WTM|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7WTM_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1168

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7WTM|1|C2|C|31
7WTM|1|C2|U|32
7WTM|1|C2|U|33
7WTM|1|C2|G|34
7WTM|1|C2|U|35
*
7WTM|1|C2|A|473
7WTM|1|C2|A|474
7WTM|1|C2|A|475
7WTM|1|C2|U|476
7WTM|1|C2|A|477
7WTM|1|C2|A|478
7WTM|1|C2|C|479
*
7WTM|1|C2|G|509
7WTM|1|C2|G|510
7WTM|1|C2|A|511
7WTM|1|C2|A|512
7WTM|1|C2|U|513
7WTM|1|C2|G|514
*
7WTM|1|C2|C|543
7WTM|1|C2|A|544
7WTM|1|C2|A|545
7WTM|1|C2|U|546
*
7WTM|1|C2|A|592
7WTM|1|C2|U|593
7WTM|1|C2|A|594
7WTM|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A