J5_7Z20_003
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7Z20|1|b|U|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Z20_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0353
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7Z20|1|b|C|583
7Z20|1|b|G|584
7Z20|1|b|A|585
7Z20|1|b|C|586
7Z20|1|b|U|587
7Z20|1|b|U|588
*
7Z20|1|b|A|667
7Z20|1|b|G|668
7Z20|1|b|A|669
7Z20|1|b|C|670
*
7Z20|1|b|G|808
7Z20|1|b|U|809
7Z20|1|b|U|810
7Z20|1|b|C|811
*
7Z20|1|b|G|1194
7Z20|1|b|C|1195
*
7Z20|1|b|G|1249
7Z20|1|b|C|1250
7Z20|1|b|G|1251
7Z20|1|b|A|1252
7Z20|1|b|A|1253
7Z20|1|b|U|1254
7Z20|1|b|G|1255
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
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