J5_7ZPQ_001

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7ZPQ|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZPQ_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0754

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ZPQ|1|2|C|31
7ZPQ|1|2|U|32
7ZPQ|1|2|U|33
7ZPQ|1|2|G|34
7ZPQ|1|2|U|35
*
7ZPQ|1|2|A|473
7ZPQ|1|2|A|474
7ZPQ|1|2|A|475
7ZPQ|1|2|U|476
7ZPQ|1|2|A|477
7ZPQ|1|2|A|478
7ZPQ|1|2|C|479
*
7ZPQ|1|2|G|509
7ZPQ|1|2|G|510
7ZPQ|1|2|A|511
7ZPQ|1|2|A|512
7ZPQ|1|2|U|513
7ZPQ|1|2|G|514
*
7ZPQ|1|2|C|543
7ZPQ|1|2|A|544
7ZPQ|1|2|A|545
7ZPQ|1|2|U|546
*
7ZPQ|1|2|A|592
7ZPQ|1|2|U|593
7ZPQ|1|2|A|594
7ZPQ|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A

Chain Ae

40S ribosomal protein S30-A