J5_7ZQ5_006

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

7ZQ5|1|b|U|2076, 7ZQ5|1|b|G|2428, 7ZQ5|1|b|G|2429, 7ZQ5|1|b|A|2430, 7ZQ5|1|b|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZQ5_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0902

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZQ5|1|b|U|2074
7ZQ5|1|b|U|2075
7ZQ5|1|b|U|2076
7ZQ5|1|b|A|2077
*
7ZQ5|1|b|U|2243
7ZQ5|1|b|U|2244
7ZQ5|1|b|U|2245
7ZQ5|1|b|G|2246
*
7ZQ5|1|b|C|2258
7ZQ5|1|b|U|2259
*
7ZQ5|1|b|A|2281
7ZQ5|1|b|G|2282
*
7ZQ5|1|b|C|2427
7ZQ5|1|b|G|2428
7ZQ5|1|b|G|2429
7ZQ5|1|b|A|2430
7ZQ5|1|b|U|2431
7ZQ5|1|b|A|2432
7ZQ5|1|b|A|2433
7ZQ5|1|b|A|2434
7ZQ5|1|b|A|2435

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain 4

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain c

50S ribosomal protein L2

Chain l

50S ribosomal protein L15

Chain y

50S ribosomal protein L27