J5_8A5I_005
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8A5I|1|A|G|1791, 8A5I|1|A|G|1796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8A5I_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.077
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8A5I|1|A|G|1723
8A5I|1|A|C|1724
8A5I|1|A|A|1725
8A5I|1|A|A|1726
8A5I|1|A|A|1727
8A5I|1|A|A|1728
8A5I|1|A|U|1729
8A5I|1|A|G|1730
8A5I|1|A|A|1731
*
8A5I|1|A|U|1755
8A5I|1|A|G|1756
*
8A5I|1|A|C|1784
8A5I|1|A|C|1785
*
8A5I|1|A|G|1789
8A5I|1|A|U|1790
8A5I|1|A|G|1791
8A5I|1|A|A|1792
8A5I|1|A|A|1793
8A5I|1|A|U|1794
8A5I|1|A|A|1795
8A5I|1|A|G|1796
8A5I|1|A|G|1797
*
8A5I|1|A|C|2021
8A5I|1|A|A|2022
8A5I|1|A|C|2023
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
Coloring options: