J5_8B2L_007

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

8B2L|1|h1|C|547

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8B2L_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0826

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8B2L|1|h1|C|31
8B2L|1|h1|U|32
8B2L|1|h1|U|33
8B2L|1|h1|G|34
8B2L|1|h1|U|35
*
8B2L|1|h1|A|477
8B2L|1|h1|A|478
8B2L|1|h1|A|479
8B2L|1|h1|U|480
8B2L|1|h1|A|481
8B2L|1|h1|A|482
8B2L|1|h1|C|483
*
8B2L|1|h1|G|512
8B2L|1|h1|G|513
8B2L|1|h1|A|514
8B2L|1|h1|A|515
8B2L|1|h1|U|516
8B2L|1|h1|G|517
*
8B2L|1|h1|C|546
8B2L|1|h1|C|547
8B2L|1|h1|A|548
8B2L|1|h1|U|549
*
8B2L|1|h1|A|595
8B2L|1|h1|U|596
8B2L|1|h1|A|597
8B2L|1|h1|OMG|598

Current chains

Chain h1

18S rRNA

Nearby chains

Chain M1

40S ribosomal protein S30

Chain T1

40S ribosomal protein S23

Chain b1

40S ribosomal protein S9-2-like