J5_8BHF_006

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8BHF|1|A3|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHF_006 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0886

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BHF|1|A3|C|30
8BHF|1|A3|U|31
8BHF|1|A3|U|32
8BHF|1|A3|G|33
8BHF|1|A3|U|34
*
8BHF|1|A3|A|521
8BHF|1|A3|A|522
8BHF|1|A3|A|523
8BHF|1|A3|U|524
8BHF|1|A3|A|525
8BHF|1|A3|A|526
8BHF|1|A3|C|527
*
8BHF|1|A3|G|558
8BHF|1|A3|G|559
8BHF|1|A3|A|560
8BHF|1|A3|A|561
8BHF|1|A3|U|562
8BHF|1|A3|G|563
*
8BHF|1|A3|C|592
8BHF|1|A3|C|593
8BHF|1|A3|A|594
8BHF|1|A3|U|595
*
8BHF|1|A3|A|641
8BHF|1|A3|U|642
8BHF|1|A3|A|643
8BHF|1|A3|G|644

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain K3

Ribosomal protein S9 (Predicted)

Chain Y3

Ribosomal protein S23

Chain f3

Ubiquitin-like domain-containing protein