J5_8CIV_007

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8CIV|1|c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CIV_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0743

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CIV|1|c|C|31
8CIV|1|c|U|32
8CIV|1|c|U|33
8CIV|1|c|G|34
8CIV|1|c|U|35
*
8CIV|1|c|A|473
8CIV|1|c|A|474
8CIV|1|c|A|475
8CIV|1|c|U|476
8CIV|1|c|A|477
8CIV|1|c|A|478
8CIV|1|c|C|479
*
8CIV|1|c|G|509
8CIV|1|c|G|510
8CIV|1|c|A|511
8CIV|1|c|A|512
8CIV|1|c|U|513
8CIV|1|c|G|514
*
8CIV|1|c|C|543
8CIV|1|c|A|544
8CIV|1|c|A|545
8CIV|1|c|U|546
*
8CIV|1|c|A|592
8CIV|1|c|U|593
8CIV|1|c|A|594
8CIV|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A