J5_8CMJ_008

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8CMJ|1|c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CMJ_008 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1784

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CMJ|1|c|C|31
8CMJ|1|c|U|32
8CMJ|1|c|U|33
8CMJ|1|c|G|34
8CMJ|1|c|U|35
*
8CMJ|1|c|A|473
8CMJ|1|c|A|474
8CMJ|1|c|A|475
8CMJ|1|c|U|476
8CMJ|1|c|A|477
8CMJ|1|c|A|478
8CMJ|1|c|C|479
*
8CMJ|1|c|G|509
8CMJ|1|c|G|510
8CMJ|1|c|A|511
8CMJ|1|c|A|512
8CMJ|1|c|U|513
8CMJ|1|c|G|514
*
8CMJ|1|c|C|543
8CMJ|1|c|A|544
8CMJ|1|c|A|545
8CMJ|1|c|U|546
*
8CMJ|1|c|A|592
8CMJ|1|c|U|593
8CMJ|1|c|A|594
8CMJ|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A