J5_8CVM_007
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8CVM|1|a|U|2258, 8CVM|1|a|G|2610, 8CVM|1|a|G|2611, 8CVM|1|a|A|2612, 8CVM|1|a|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CVM_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0871
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CVM|1|a|U|2256
8CVM|1|a|U|2257
8CVM|1|a|U|2258
8CVM|1|a|A|2259
*
8CVM|1|a|U|2425
8CVM|1|a|U|2426
8CVM|1|a|U|2427
8CVM|1|a|G|2428
*
8CVM|1|a|C|2440
8CVM|1|a|G|2441
*
8CVM|1|a|C|2463
8CVM|1|a|G|2464
*
8CVM|1|a|C|2609
8CVM|1|a|G|2610
8CVM|1|a|G|2611
8CVM|1|a|A|2612
8CVM|1|a|U|2613
8CVM|1|a|A|2614
8CVM|1|a|A|2615
8CVM|1|a|A|2616
8CVM|1|a|A|2617
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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