J5_8G31_003

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8G31|1|B|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G31_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0677

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8G31|1|B|C|584
8G31|1|B|G|585
8G31|1|B|A|586
8G31|1|B|C|587
8G31|1|B|U|588
8G31|1|B|U|589
*
8G31|1|B|A|668
8G31|1|B|G|669
8G31|1|B|A|670
8G31|1|B|C|671
*
8G31|1|B|G|809
8G31|1|B|U|810
8G31|1|B|U|811
8G31|1|B|C|812
*
8G31|1|B|G|1195
8G31|1|B|C|1196
*
8G31|1|B|G|1250
8G31|1|B|C|1251
8G31|1|B|G|1252
8G31|1|B|A|1253
8G31|1|B|A|1254
8G31|1|B|U|1255
8G31|1|B|G|1256

Current chains

Chain B

23S

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

Ribosomal protein L21