3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
Length
26 nucleotides
Bulged bases
8G61|1|S2|C|593
QA status
Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8G61_006 not in the Motif Atlas
Homologous match to J5_8C3A_018
Geometric discrepancy: 0.1429
The information below is about J5_8C3A_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_19320.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8G61|1|S2|C|30
8G61|1|S2|U|31
8G61|1|S2|U|32
8G61|1|S2|G|33
8G61|1|S2|PSU|34
*
8G61|1|S2|A|521
8G61|1|S2|A|522
8G61|1|S2|A|523
8G61|1|S2|U|524
8G61|1|S2|A|525
8G61|1|S2|A|526
8G61|1|S2|C|527
*
8G61|1|S2|G|558
8G61|1|S2|G|559
8G61|1|S2|A|560
8G61|1|S2|A|561
8G61|1|S2|U|562
8G61|1|S2|G|563
*
8G61|1|S2|C|592
8G61|1|S2|C|593
8G61|1|S2|A|594
8G61|1|S2|U|595
*
8G61|1|S2|A|641
8G61|1|S2|U|642
8G61|1|S2|A|643
8G61|1|S2|OMG|644

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
uS12
Chain Se
FAU ubiquitin-like and ribosomal protein S30

Coloring options:


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