J5_8HL2_004

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAGUU*AGGC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

8HL2|1|A23S|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HL2_004 not in the Motif Atlas

Homologous match to J5_4V9F_003

Geometric discrepancy: 0.1897

The information below is about J5_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_15067.1

Basepair signature

cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|G|680
8HL2|1|A23S|G|681
8HL2|1|A23S|A|682
8HL2|1|A23S|G|683
8HL2|1|A23S|U|684
8HL2|1|A23S|U|685
*
8HL2|1|A23S|A|801
8HL2|1|A23S|G|802
8HL2|1|A23S|G|803
8HL2|1|A23S|C|804
*
8HL2|1|A23S|G|945
8HL2|1|A23S|U|946
8HL2|1|A23S|U|947
8HL2|1|A23S|C|948
*
8HL2|1|A23S|G|1339
8HL2|1|A23S|C|1340
*
8HL2|1|A23S|G|1393
8HL2|1|A23S|C|1394
8HL2|1|A23S|A|1395
8HL2|1|A23S|G|1396
8HL2|1|A23S|A|1397
8HL2|1|A23S|U|1398
8HL2|1|A23S|C|1399

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L32E

50S ribosomal protein L32e