J5_8OI5_016

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AAAG

Length

26 nucleotides

Bulged bases

8OI5|1|CM|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8OI5_016 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0461

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8OI5|1|CM|C|31
8OI5|1|CM|U|32
8OI5|1|CM|U|33
8OI5|1|CM|G|34
8OI5|1|CM|U|35
*
8OI5|1|CM|A|471
8OI5|1|CM|A|472
8OI5|1|CM|A|473
8OI5|1|CM|U|474
8OI5|1|CM|A|475
8OI5|1|CM|A|476
8OI5|1|CM|C|477
*
8OI5|1|CM|G|507
8OI5|1|CM|G|508
8OI5|1|CM|A|509
8OI5|1|CM|A|510
8OI5|1|CM|U|511
8OI5|1|CM|G|512
*
8OI5|1|CM|C|541
8OI5|1|CM|A|542
8OI5|1|CM|A|543
8OI5|1|CM|U|544
*
8OI5|1|CM|A|590
8OI5|1|CM|A|591
8OI5|1|CM|A|592
8OI5|1|CM|G|593

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30