J5_8OZ0_001
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 8OZ0|1|W|C|593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OZ0_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1214
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OZ0|1|W|C|30
8OZ0|1|W|U|31
8OZ0|1|W|U|32
8OZ0|1|W|G|33
8OZ0|1|W|U|34
*
8OZ0|1|W|A|521
8OZ0|1|W|A|522
8OZ0|1|W|A|523
8OZ0|1|W|U|524
8OZ0|1|W|A|525
8OZ0|1|W|A|526
8OZ0|1|W|C|527
*
8OZ0|1|W|G|558
8OZ0|1|W|G|559
8OZ0|1|W|A|560
8OZ0|1|W|A|561
8OZ0|1|W|U|562
8OZ0|1|W|G|563
*
8OZ0|1|W|C|592
8OZ0|1|W|C|593
8OZ0|1|W|A|594
8OZ0|1|W|U|595
*
8OZ0|1|W|A|641
8OZ0|1|W|U|642
8OZ0|1|W|A|643
8OZ0|1|W|OMG|644
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain I
- Eukaryotic translation initiation factor 3 subunit B
- Chain Z
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S23
- Chain b
- 40S ribosomal protein S30
Coloring options: