J5_8R3V_003

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8R3V|1|72|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8R3V_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.049

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8R3V|1|72|C|584
8R3V|1|72|G|585
8R3V|1|72|A|586
8R3V|1|72|C|587
8R3V|1|72|U|588
8R3V|1|72|U|589
*
8R3V|1|72|A|668
8R3V|1|72|G|669
8R3V|1|72|A|670
8R3V|1|72|C|671
*
8R3V|1|72|G|809
8R3V|1|72|U|810
8R3V|1|72|U|811
8R3V|1|72|C|812
*
8R3V|1|72|G|1195
8R3V|1|72|C|1196
*
8R3V|1|72|G|1250
8R3V|1|72|C|1251
8R3V|1|72|G|1252
8R3V|1|72|A|1253
8R3V|1|72|A|1254
8R3V|1|72|U|1255
8R3V|1|72|G|1256

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35

Chain o2

50S ribosomal protein L15