J5_8R55_003

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8R55|1|X|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8R55_003 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1065

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|C|47
8R55|1|X|G|48
8R55|1|X|A|49
8R55|1|X|U|50
8R55|1|X|G|51
8R55|1|X|A|52
8R55|1|X|A|53
8R55|1|X|G|54
*
8R55|1|X|C|115
8R55|1|X|G|116
8R55|1|X|A|117
8R55|1|X|A|118
8R55|1|X|U|119
8R55|1|X|G|120
*
8R55|1|X|C|129
8R55|1|X|A|130
*
8R55|1|X|U|149
8R55|1|X|A|150
8R55|1|X|U|151
*
8R55|1|X|A|178
8R55|1|X|A|179
8R55|1|X|G|180

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23