J5_8RDV_003
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|1239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RDV_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0396
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|Z2|C|569
8RDV|1|Z2|G|570
8RDV|1|Z2|A|571
8RDV|1|Z2|C|572
8RDV|1|Z2|U|573
8RDV|1|Z2|U|574
*
8RDV|1|Z2|A|653
8RDV|1|Z2|G|654
8RDV|1|Z2|A|655
8RDV|1|Z2|C|656
*
8RDV|1|Z2|G|794
8RDV|1|Z2|U|795
8RDV|1|Z2|U|796
8RDV|1|Z2|C|797
*
8RDV|1|Z2|G|1179
8RDV|1|Z2|C|1180
*
8RDV|1|Z2|G|1234
8RDV|1|Z2|C|1235
8RDV|1|Z2|G|1236
8RDV|1|Z2|A|1237
8RDV|1|Z2|A|1238
8RDV|1|Z2|U|1239
8RDV|1|Z2|G|1240
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain PO
- Large ribosomal subunit protein bL20
- Chain Qb
- Large ribosomal subunit protein bL21
- Chain dh
- Large ribosomal subunit protein bL35
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