J5_8T3B_007

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8T3B|1|B5|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|B5|C|31
8T3B|1|B5|U|32
8T3B|1|B5|U|33
8T3B|1|B5|G|34
8T3B|1|B5|U|35
*
8T3B|1|B5|A|473
8T3B|1|B5|A|474
8T3B|1|B5|A|475
8T3B|1|B5|U|476
8T3B|1|B5|A|477
8T3B|1|B5|A|478
8T3B|1|B5|C|479
*
8T3B|1|B5|G|509
8T3B|1|B5|G|510
8T3B|1|B5|A|511
8T3B|1|B5|A|512
8T3B|1|B5|U|513
8T3B|1|B5|G|514
*
8T3B|1|B5|C|543
8T3B|1|B5|A|544
8T3B|1|B5|A|545
8T3B|1|B5|U|546
*
8T3B|1|B5|A|592
8T3B|1|B5|U|593
8T3B|1|B5|A|594
8T3B|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A