3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8T5H|1|B|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8T5H_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0763
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8T5H|1|B|C|584
8T5H|1|B|G|585
8T5H|1|B|A|586
8T5H|1|B|C|587
8T5H|1|B|U|588
8T5H|1|B|U|589
*
8T5H|1|B|A|668
8T5H|1|B|G|669
8T5H|1|B|A|670
8T5H|1|B|C|671
*
8T5H|1|B|G|809
8T5H|1|B|U|810
8T5H|1|B|U|811
8T5H|1|B|C|812
*
8T5H|1|B|G|1195
8T5H|1|B|C|1196
*
8T5H|1|B|G|1250
8T5H|1|B|C|1251
8T5H|1|B|G|1252
8T5H|1|B|A|1253
8T5H|1|B|A|1254
8T5H|1|B|U|1255
8T5H|1|B|G|1256

Current chains

Chain B
23S

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
Ribosomal protein L21

Coloring options:


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