3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
Length
26 nucleotides
Bulged bases
8UT0|1|2|A|544
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UT0_001 not in the Motif Atlas
Homologous match to J5_8C3A_018
Geometric discrepancy: 0.0885
The information below is about J5_8C3A_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_19320.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8UT0|1|2|C|31
8UT0|1|2|U|32
8UT0|1|2|U|33
8UT0|1|2|G|34
8UT0|1|2|U|35
*
8UT0|1|2|A|473
8UT0|1|2|A|474
8UT0|1|2|A|475
8UT0|1|2|U|476
8UT0|1|2|A|477
8UT0|1|2|A|478
8UT0|1|2|C|479
*
8UT0|1|2|G|509
8UT0|1|2|G|510
8UT0|1|2|A|511
8UT0|1|2|A|512
8UT0|1|2|U|513
8UT0|1|2|G|514
*
8UT0|1|2|C|543
8UT0|1|2|A|544
8UT0|1|2|A|545
8UT0|1|2|U|546
*
8UT0|1|2|A|592
8UT0|1|2|U|593
8UT0|1|2|A|594
8UT0|1|2|G|595

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SW
40S ribosomal protein S9-A
Chain Sc
40S ribosomal protein S23-A
Chain Sg
40S ribosomal protein S30-A

Coloring options:


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