J5_8UT0_001

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8UT0|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UT0_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0885

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UT0|1|2|C|31
8UT0|1|2|U|32
8UT0|1|2|U|33
8UT0|1|2|G|34
8UT0|1|2|U|35
*
8UT0|1|2|A|473
8UT0|1|2|A|474
8UT0|1|2|A|475
8UT0|1|2|U|476
8UT0|1|2|A|477
8UT0|1|2|A|478
8UT0|1|2|C|479
*
8UT0|1|2|G|509
8UT0|1|2|G|510
8UT0|1|2|A|511
8UT0|1|2|A|512
8UT0|1|2|U|513
8UT0|1|2|G|514
*
8UT0|1|2|C|543
8UT0|1|2|A|544
8UT0|1|2|A|545
8UT0|1|2|U|546
*
8UT0|1|2|A|592
8UT0|1|2|U|593
8UT0|1|2|A|594
8UT0|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A

Chain Sg

40S ribosomal protein S30-A