J5_8UU8_007
3D structure
- PDB id
- 8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8UU8|1|A|U|2109, 8UU8|1|A|G|2461, 8UU8|1|A|G|2462, 8UU8|1|A|A|2463, 8UU8|1|A|U|2464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UU8_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0757
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU8|1|A|U|2107
8UU8|1|A|U|2108
8UU8|1|A|U|2109
8UU8|1|A|A|2110
*
8UU8|1|A|U|2276
8UU8|1|A|U|2277
8UU8|1|A|U|2278
8UU8|1|A|G|2279
*
8UU8|1|A|C|2291
8UU8|1|A|G|2292
*
8UU8|1|A|C|2314
8UU8|1|A|G|2315
*
8UU8|1|A|C|2460
8UU8|1|A|G|2461
8UU8|1|A|G|2462
8UU8|1|A|A|2463
8UU8|1|A|U|2464
8UU8|1|A|A|2465
8UU8|1|A|A|2466
8UU8|1|A|A|2467
8UU8|1|A|A|2468
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain N
- Large ribosomal subunit protein uL15
- Chain Y
- Large ribosomal subunit protein bL27
- Chain Z
- Large ribosomal subunit protein bL28
- Chain x
- Transfer RNA; tRNA
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