J5_8VK7_001

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VK7|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VK7_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0818

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|C|44
8VK7|1|A|G|45
8VK7|1|A|A|46
8VK7|1|A|U|47
8VK7|1|A|G|48
8VK7|1|A|A|49
8VK7|1|A|A|50
8VK7|1|A|G|51
*
8VK7|1|A|C|113
8VK7|1|A|G|114
8VK7|1|A|A|115
8VK7|1|A|A|116
8VK7|1|A|U|117
8VK7|1|A|G|118
*
8VK7|1|A|C|127
8VK7|1|A|G|128
*
8VK7|1|A|C|147
8VK7|1|A|A|148
8VK7|1|A|C|149
*
8VK7|1|A|G|175
8VK7|1|A|G|176
8VK7|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34