J5_8VOP_005
3D structure
- PDB id
- 8VOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8VOP|1|a|A|532, 8VOP|1|a|U|562
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VOP|1|a|C|531
8VOP|1|a|A|532
8VOP|1|a|G|533
*
8VOP|1|a|C|560
8VOP|1|a|G|561
8VOP|1|a|U|562
8VOP|1|a|A|563
8VOP|1|a|C|564
*
8VOP|1|a|G|577
8VOP|1|a|G|578
8VOP|1|a|G|579
*
8VOP|1|a|C|1261
8VOP|1|a|A|1262
*
8VOP|1|a|U|2017
8VOP|1|a|G|2018
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Ribosomal protein L21
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
- Chain z
- 50S ribosomal protein L20
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