J5_8WHY_001

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8WHY|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WHY_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0767

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WHY|1|A|C|44
8WHY|1|A|G|45
8WHY|1|A|A|46
8WHY|1|A|U|47
8WHY|1|A|G|48
8WHY|1|A|A|49
8WHY|1|A|A|50
8WHY|1|A|G|51
*
8WHY|1|A|C|113
8WHY|1|A|G|114
8WHY|1|A|A|115
8WHY|1|A|A|116
8WHY|1|A|U|117
8WHY|1|A|G|118
*
8WHY|1|A|C|127
8WHY|1|A|G|128
*
8WHY|1|A|C|147
8WHY|1|A|A|148
8WHY|1|A|C|149
*
8WHY|1|A|G|175
8WHY|1|A|G|176
8WHY|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23