J5_8WHY_003
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8WHY|1|A|C|619, 8WHY|1|A|U|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8WHY_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0945
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WHY|1|A|C|618
8WHY|1|A|C|619
8WHY|1|A|G|620
*
8WHY|1|A|C|652
8WHY|1|A|G|653
8WHY|1|A|U|654
8WHY|1|A|G|655
8WHY|1|A|C|656
*
8WHY|1|A|G|669
8WHY|1|A|A|670
8WHY|1|A|G|671
*
8WHY|1|A|C|1376
8WHY|1|A|A|1377
*
8WHY|1|A|U|2241
8WHY|1|A|G|2242
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain G
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L13
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
- Chain V
- 50S ribosomal protein L22
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