J5_8WV1_004
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8WV1|1|A|A|557, 8WV1|1|A|U|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8WV1_004 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.185
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WV1|1|A|C|556
8WV1|1|A|A|557
8WV1|1|A|G|558
*
8WV1|1|A|C|583
8WV1|1|A|G|584
8WV1|1|A|U|585
8WV1|1|A|G|586
8WV1|1|A|C|587
*
8WV1|1|A|G|600
8WV1|1|A|A|601
8WV1|1|A|G|602
*
8WV1|1|A|C|1307
8WV1|1|A|A|1308
*
8WV1|1|A|U|2039
8WV1|1|A|G|2040
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
- Chain R
- 50S ribosomal protein L22
Coloring options: