J5_8YLR_001

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8YLR|1|2|A|544

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8YLR_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1181

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8YLR|1|2|C|31
8YLR|1|2|U|32
8YLR|1|2|U|33
8YLR|1|2|G|34
8YLR|1|2|U|35
*
8YLR|1|2|A|473
8YLR|1|2|A|474
8YLR|1|2|A|475
8YLR|1|2|U|476
8YLR|1|2|A|477
8YLR|1|2|A|478
8YLR|1|2|C|479
*
8YLR|1|2|G|509
8YLR|1|2|G|510
8YLR|1|2|A|511
8YLR|1|2|A|512
8YLR|1|2|U|513
8YLR|1|2|G|514
*
8YLR|1|2|C|543
8YLR|1|2|A|544
8YLR|1|2|A|545
8YLR|1|2|U|546
*
8YLR|1|2|A|592
8YLR|1|2|U|593
8YLR|1|2|A|594
8YLR|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A