J5_9B24_013
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9B24|1|Y|C|2299, 9B24|1|Y|G|2652, 9B24|1|Y|G|2653, 9B24|1|Y|A|2654, 9B24|1|Y|A|2658
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B24_013 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1501
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|Y|U|2297
9B24|1|Y|U|2298
9B24|1|Y|C|2299
9B24|1|Y|A|2300
*
9B24|1|Y|U|2467
9B24|1|Y|U|2468
9B24|1|Y|U|2469
9B24|1|Y|A|2470
*
9B24|1|Y|U|2482
9B24|1|Y|G|2483
*
9B24|1|Y|C|2505
9B24|1|Y|G|2506
*
9B24|1|Y|C|2651
9B24|1|Y|G|2652
9B24|1|Y|G|2653
9B24|1|Y|A|2654
9B24|1|Y|U|2655
9B24|1|Y|A|2656
9B24|1|Y|A|2657
9B24|1|Y|A|2658
9B24|1|Y|A|2659
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL35
- Chain Z
- Large ribosomal subunit protein uL2
- Chain h
- Large ribosomal subunit protein uL15
- Chain s
- Large ribosomal subunit protein bL27
- Chain t
- Large ribosomal subunit protein bL28
- Chain y
- Large ribosomal subunit protein bL33A
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