3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
9D89|1|D|U|1257
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9D89_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0294
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

9D89|1|D|C|586
9D89|1|D|G|587
9D89|1|D|A|588
9D89|1|D|C|589
9D89|1|D|U|590
9D89|1|D|U|591
*
9D89|1|D|A|670
9D89|1|D|G|671
9D89|1|D|A|672
9D89|1|D|C|673
*
9D89|1|D|G|811
9D89|1|D|U|812
9D89|1|D|U|813
9D89|1|D|C|814
*
9D89|1|D|G|1197
9D89|1|D|C|1198
*
9D89|1|D|G|1252
9D89|1|D|C|1253
9D89|1|D|G|1254
9D89|1|D|A|1255
9D89|1|D|A|1256
9D89|1|D|U|1257
9D89|1|D|G|1258

Current chains

Chain D
23S rRNA

Nearby chains

Chain B
50S ribosomal protein L35
Chain H
50S ribosomal protein L4
Chain I
50S ribosomal protein L15
Chain p
Large ribosomal subunit protein bL20
Chain q
50S ribosomal protein L21

Coloring options:


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