J5_9D89_003
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9D89|1|D|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9D89_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0294
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|C|586
9D89|1|D|G|587
9D89|1|D|A|588
9D89|1|D|C|589
9D89|1|D|U|590
9D89|1|D|U|591
*
9D89|1|D|A|670
9D89|1|D|G|671
9D89|1|D|A|672
9D89|1|D|C|673
*
9D89|1|D|G|811
9D89|1|D|U|812
9D89|1|D|U|813
9D89|1|D|C|814
*
9D89|1|D|G|1197
9D89|1|D|C|1198
*
9D89|1|D|G|1252
9D89|1|D|C|1253
9D89|1|D|G|1254
9D89|1|D|A|1255
9D89|1|D|A|1256
9D89|1|D|U|1257
9D89|1|D|G|1258
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L35
- Chain H
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
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