J5_9D89_006
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9D89|1|D|U|2080, 9D89|1|D|G|2432, 9D89|1|D|G|2433, 9D89|1|D|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9D89_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1117
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|U|2078
9D89|1|D|U|2079
9D89|1|D|U|2080
9D89|1|D|A|2081
*
9D89|1|D|U|2247
9D89|1|D|U|2248
9D89|1|D|U|2249
9D89|1|D|G|2250
*
9D89|1|D|C|2262
9D89|1|D|U|2263
*
9D89|1|D|A|2285
9D89|1|D|G|2286
*
9D89|1|D|C|2431
9D89|1|D|G|2432
9D89|1|D|G|2433
9D89|1|D|A|2434
9D89|1|D|U|2435
9D89|1|D|A|2436
9D89|1|D|A|2437
9D89|1|D|A|2438
9D89|1|D|A|2439
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain B
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain L
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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